Storage: Allow the muffins to cool completely. Store in a large Ziploc freezer bag or other airtight container. The muffins will last for 2-3 days at room temperature, or you can freeze the muffins for up to 3 months. The glaze may become slightly runny if frozen and thawed, so if you plan to freeze the muffins right away, skip the glaze and add it later (after you thaw the muffins).